WormBase Tree Display for CDS: PPA28719
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| PPA28719 | SMap | S_parent | Sequence | PPA_ChrI | ||
|---|---|---|---|---|---|---|
| Structure | Source_exons (34) | |||||
| DB_info | Database | pristionchus.org | cds | gene-UMM-S207-3.33 | ||
| TREEFAM | TREEFAM_ID | TF105866 | ||||
| DB_remark | PPA-EIF-2A protein; contains similarity to Pfam domains PF03265 (Deoxyribonuclease II), PF08662 (Eukaryotic translation initiation factor eIF2A); contains similarity to Interpro domains IPR013979 (Translation initiation factor, beta propellor-like domain), IPR004947 (Deoxyribonuclease II), IPR011387 (Translation initiation factor 2A), IPR015943 (WD40/YVTN repeat-like-containing domain superfamily) | |||||
| Origin | From_laboratory | RS | ||||
| Species | Pristionchus pacificus | |||||
| Properties | Coding | CDS | ||||
| CDS_predicted_by | pristionchus.org | |||||
| Prediction_status | Partially_confirmed | |||||
| Visible | Gene | WBGene00118273 | ||||
| Corresponding_transcript | PPA28719.1 | |||||
| Corresponding_protein | PP69689 | |||||
| Corresponding_oligo_set | GPL14372_Probes_24872 | |||||
| GPL14372_Probes_24873 | ||||||
| GPL14372_Probes_24874 | ||||||
| GPL14372_Probes_24875 | ||||||
| GPL14372_Probes_78112 | ||||||
| GPL14372_Probes_78113 | ||||||
| GPL14372_Probes_78114 | ||||||
| GPL14372_Probes_78115 | ||||||
| GPL14372_Probes_78116 | ||||||
| GPL14372_Probes_78117 | ||||||
| Matching_cDNA | FG101933 | Inferred_automatically | transcript_builder.pl | |||
| AW097598 | Inferred_automatically | transcript_builder.pl | ||||
| FE940279 | Inferred_automatically | transcript_builder.pl | ||||
| EB184163 | Inferred_automatically | transcript_builder.pl | ||||
| Microarray_results | GPL14372_Probes_24872 | |||||
| GPL14372_Probes_24873 | ||||||
| GPL14372_Probes_24874 | ||||||
| GPL14372_Probes_24875 | ||||||
| GPL14372_Probes_78112 | ||||||
| GPL14372_Probes_78113 | ||||||
| GPL14372_Probes_78114 | ||||||
| GPL14372_Probes_78115 | ||||||
| GPL14372_Probes_78116 | ||||||
| GPL14372_Probes_78117 | ||||||
| RNASeq_FPKM | WBls:0000032 | 8.11382 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
| WBls:0000101 | 39.5254 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
| Remark | [171116 mh6] renamed from gene-UMM-S207-3.33 | Curator_confirmed | WBPerson4055 | |||
| Method | curated |
