WormBase Tree Display for CDS: PPA28735
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| PPA28735 | SMap | S_parent | Sequence | PPA_ChrI | ||
|---|---|---|---|---|---|---|
| Structure | Source_exons (43) | |||||
| DB_info | Database | pristionchus.org | cds | gene-UMA-S207-4.37 | ||
| TREEFAM | TREEFAM_ID | TF300394 | ||||
| DB_remark | contains similarity to Pfam domains PF00180 (Isocitrate/isopropylmalate dehydrogenase), PF02990 (Endomembrane protein 70); contains similarity to Interpro domains IPR004790 (Isocitrate dehydrogenase NADP-dependent), IPR004240 (Nonaspanin (TM9SF)), IPR024084 (Isopropylmalate dehydrogenase-like domain) | |||||
| Origin | From_laboratory | RS | ||||
| Species | Pristionchus pacificus | |||||
| Properties | Coding | CDS | ||||
| CDS_predicted_by | pristionchus.org | |||||
| Prediction_status | Partially_confirmed | |||||
| Visible | Gene | WBGene00118289 | ||||
| Corresponding_transcript | PPA28735.1 | |||||
| Corresponding_protein | PP61013 | |||||
| Corresponding_oligo_set | GPL14372_Probes_24868 | |||||
| GPL14372_Probes_24869 | ||||||
| GPL14372_Probes_78060 | ||||||
| GPL14372_Probes_78061 | ||||||
| GPL14372_Probes_78062 | ||||||
| GPL14372_Probes_78063 | ||||||
| GPL14372_Probes_78065 | ||||||
| GPL14372_Probes_78069 | ||||||
| GPL14372_Probes_78070 | ||||||
| Matching_cDNA | FG099372 | Inferred_automatically | transcript_builder.pl | |||
| FG100817 | Inferred_automatically | transcript_builder.pl | ||||
| AI989062 | Inferred_automatically | transcript_builder.pl | ||||
| FG098795 | Inferred_automatically | transcript_builder.pl | ||||
| AW052529 | Inferred_automatically | transcript_builder.pl | ||||
| Microarray_results | GPL14372_Probes_24868 | |||||
| GPL14372_Probes_24869 | ||||||
| GPL14372_Probes_78060 | ||||||
| GPL14372_Probes_78061 | ||||||
| GPL14372_Probes_78062 | ||||||
| GPL14372_Probes_78063 | ||||||
| GPL14372_Probes_78065 | ||||||
| GPL14372_Probes_78069 | ||||||
| GPL14372_Probes_78070 | ||||||
| RNASeq_FPKM | WBls:0000032 | 17.781 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
| WBls:0000101 | 13.9987 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
| Remark | [171116 mh6] renamed from gene-UMA-S207-4.37 | Curator_confirmed | WBPerson4055 | |||
| Method | curated |
