WormBase Tree Display for CDS: PPA28744
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PPA28744 | SMap | S_parent | Sequence | PPA_ChrI | ||
---|---|---|---|---|---|---|
Structure | Source_exons (34) | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S207-4.5 | ||
DB_remark | PPA-UNC-2 protein; contains similarity to Pfam domains PF00520 (Ion transport protein), PF08763 (Voltage gated calcium channel IQ domain), PF16905 (Voltage-dependent L-type calcium channel, IQ-associated); contains similarity to Interpro domains IPR014873 (Voltage-dependent calcium channel, alpha-1 subunit, IQ domain), IPR031649 (Voltage-dependent L-type calcium channel, IQ-associated domain), IPR005821 (Ion transport domain), IPR005447 (Voltage-dependent calcium channel, N-type, alpha-1 subunit), IPR027359 (Voltage-dependent channel domain superfamily) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Predicted | |||||
Visible | Gene | WBGene00118298 | ||||
Corresponding_transcript | PPA28744.1 | |||||
Corresponding_protein | PP63569 | |||||
Corresponding_oligo_set | GPL14372_Probes_24859 | |||||
GPL14372_Probes_24860 | ||||||
GPL14372_Probes_24861 | ||||||
GPL14372_Probes_24862 | ||||||
GPL14372_Probes_24863 | ||||||
GPL14372_Probes_78034 | ||||||
GPL14372_Probes_78036 | ||||||
GPL14372_Probes_78037 | ||||||
Microarray_results | GPL14372_Probes_24859 | |||||
GPL14372_Probes_24860 | ||||||
GPL14372_Probes_24861 | ||||||
GPL14372_Probes_24862 | ||||||
GPL14372_Probes_24863 | ||||||
GPL14372_Probes_78034 | ||||||
GPL14372_Probes_78036 | ||||||
GPL14372_Probes_78037 | ||||||
RNASeq_FPKM | WBls:0000032 | 2.08543 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMM-S207-4.5 | Curator_confirmed | WBPerson4055 | |||
Method | curated |