WormBase Tree Display for CDS: PPA28800
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| PPA28800 | SMap | S_parent | Sequence | PPA_ChrI | ||
|---|---|---|---|---|---|---|
| Structure | Source_exons (11) | |||||
| DB_info | Database | pristionchus.org | cds | gene-UMM-S259-14.62 | ||
| TREEFAM | TREEFAM_ID | TF313363 | ||||
| DB_remark | contains similarity to Pfam domain PF01070 (FMN-dependent dehydrogenase); contains similarity to Interpro domains IPR012133 (Alpha-hydroxy acid dehydrogenase, FMN-dependent), IPR013785 (Aldolase-type TIM barrel), IPR000262 (FMN-dependent dehydrogenase) | |||||
| Origin | From_laboratory | RS | ||||
| Species | Pristionchus pacificus | |||||
| Properties | Coding | CDS | ||||
| CDS_predicted_by | pristionchus.org | |||||
| Prediction_status | Partially_confirmed | |||||
| Visible | Gene | WBGene00118354 | ||||
| Corresponding_transcript | PPA28800.1 | |||||
| Corresponding_protein | PP52573 | |||||
| Corresponding_oligo_set | GPL14372_Probes_63155 | |||||
| GPL14372_Probes_63156 | ||||||
| GPL14372_Probes_63157 | ||||||
| GPL14372_Probes_63158 | ||||||
| GPL14372_Probes_63159 | ||||||
| GPL14372_Probes_63160 | ||||||
| GPL14372_Probes_63161 | ||||||
| Matching_cDNA | FE933065 | Inferred_automatically | transcript_builder.pl | |||
| FG096888 | Inferred_automatically | transcript_builder.pl | ||||
| Microarray_results | GPL14372_Probes_63155 | |||||
| GPL14372_Probes_63156 | ||||||
| GPL14372_Probes_63157 | ||||||
| GPL14372_Probes_63158 | ||||||
| GPL14372_Probes_63159 | ||||||
| GPL14372_Probes_63160 | ||||||
| GPL14372_Probes_63161 | ||||||
| RNASeq_FPKM | WBls:0000032 | 30.0465 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
| WBls:0000101 | 47.3179 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
| Remark | [171116 mh6] renamed from gene-UMM-S259-14.62 | Curator_confirmed | WBPerson4055 | |||
| Method | curated |
