WormBase Tree Display for CDS: PPA28803
expand all nodes | collapse all nodes | view schema
PPA28803 | SMap | S_parent | Sequence | PPA_ChrI | ||
---|---|---|---|---|---|---|
Structure | Source_exons (11) | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S259-14.65 | ||
TREEFAM | TREEFAM_ID | TF105826 | ||||
DB_remark | PPA-MDH-1 protein; contains similarity to Pfam domains PF00056 (lactate/malate dehydrogenase, NAD binding domain), PF02866 (lactate/malate dehydrogenase, alpha/beta C-terminal domain); contains similarity to Interpro domains IPR011274 (Malate dehydrogenase, NAD-dependent, cytosolic), IPR036291 (NAD(P)-binding domain superfamily), IPR001557 (L-lactate/malate dehydrogenase), IPR001236 (Lactate/malate dehydrogenase, N-terminal), IPR010945 (Malate dehydrogenase, type 2), IPR022383 (Lactate/malate dehydrogenase, C-terminal), IPR015955 (Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Partially_confirmed | |||||
Visible | Gene | WBGene00118357 | ||||
Corresponding_transcript | PPA28803.1 | |||||
Corresponding_protein | PP68672 | |||||
Corresponding_oligo_set | GPL14372_Probes_63168 | |||||
GPL14372_Probes_63169 | ||||||
GPL14372_Probes_63170 | ||||||
Matching_cDNA | FE941535 | Inferred_automatically | transcript_builder.pl | |||
AW097904 | Inferred_automatically | transcript_builder.pl | ||||
FE934439 | Inferred_automatically | transcript_builder.pl | ||||
Microarray_results | GPL14372_Probes_63168 | |||||
GPL14372_Probes_63169 | ||||||
GPL14372_Probes_63170 | ||||||
RNASeq_FPKM | WBls:0000032 | 7.78792 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 22.997 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMM-S259-14.65 | Curator_confirmed | WBPerson4055 | |||
Method | curated |