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WormBase Tree Display for CDS: PPA28803

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Name Class

PPA28803SMapS_parentSequencePPA_ChrI
StructureSource_exons (11)
DB_infoDatabasepristionchus.orgcdsgene-UMM-S259-14.65
TREEFAMTREEFAM_IDTF105826
DB_remarkPPA-MDH-1 protein; contains similarity to Pfam domains PF00056 (lactate/malate dehydrogenase, NAD binding domain), PF02866 (lactate/malate dehydrogenase, alpha/beta C-terminal domain); contains similarity to Interpro domains IPR011274 (Malate dehydrogenase, NAD-dependent, cytosolic), IPR036291 (NAD(P)-binding domain superfamily), IPR001557 (L-lactate/malate dehydrogenase), IPR001236 (Lactate/malate dehydrogenase, N-terminal), IPR010945 (Malate dehydrogenase, type 2), IPR022383 (Lactate/malate dehydrogenase, C-terminal), IPR015955 (Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal)
OriginFrom_laboratoryRS
SpeciesPristionchus pacificus
PropertiesCodingCDS
CDS_predicted_bypristionchus.org
Prediction_statusPartially_confirmed
VisibleGeneWBGene00118357
Corresponding_transcriptPPA28803.1
Corresponding_proteinPP68672
Corresponding_oligo_setGPL14372_Probes_63168
GPL14372_Probes_63169
GPL14372_Probes_63170
Matching_cDNAFE941535Inferred_automaticallytranscript_builder.pl
AW097904Inferred_automaticallytranscript_builder.pl
FE934439Inferred_automaticallytranscript_builder.pl
Microarray_resultsGPL14372_Probes_63168
GPL14372_Probes_63169
GPL14372_Probes_63170
RNASeq_FPKMWBls:00000327.78792From_analysisRNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659
WBls:000010122.997From_analysisRNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656
Remark[171116 mh6] renamed from gene-UMM-S259-14.65Curator_confirmedWBPerson4055
Methodcurated