WormBase Tree Display for CDS: PPA28806
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PPA28806 | SMap | S_parent | Sequence | PPA_ChrI | ||
---|---|---|---|---|---|---|
Structure | Source_exons | 1 | 53 | |||
132 | 235 | |||||
319 | 408 | |||||
625 | 715 | |||||
825 | 925 | |||||
1073 | 1148 | |||||
1255 | 1384 | |||||
1513 | 1674 | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S259-14.54 | ||
TREEFAM | TREEFAM_ID | TF313100 | ||||
DB_remark | contains similarity to Pfam domain PF04893 (Yip1 domain); contains similarity to Interpro domain IPR006977 (Yip1 domain) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Partially_confirmed | |||||
Visible | Gene | WBGene00118360 | ||||
Corresponding_transcript | PPA28806.1 | |||||
Corresponding_protein | PP63599 | |||||
Corresponding_oligo_set | GPL14372_Probes_63182 | |||||
GPL14372_Probes_63184 | ||||||
GPL14372_Probes_63185 | ||||||
Matching_cDNA | AW052400 | Inferred_automatically | transcript_builder.pl | |||
Microarray_results | GPL14372_Probes_63182 | |||||
GPL14372_Probes_63184 | ||||||
GPL14372_Probes_63185 | ||||||
RNASeq_FPKM | WBls:0000032 | 18.2105 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 59.1539 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMM-S259-14.54 | Curator_confirmed | WBPerson4055 | |||
Method | curated |