WormBase Tree Display for CDS: PPA28807
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| PPA28807 | SMap | S_parent | Sequence | PPA_ChrI | ||
|---|---|---|---|---|---|---|
| Structure | Source_exons | 1 | 48 | |||
| 141 | 235 | |||||
| 431 | 529 | |||||
| 1358 | 1429 | |||||
| 1589 | 1658 | |||||
| 2087 | 2203 | |||||
| DB_info | Database | pristionchus.org | cds | gene-UMM-S259-14.66 | ||
| DB_remark | PPA-LEC-12 protein; contains similarity to Pfam domain PF00337 (Galactoside-binding lectin); contains similarity to Interpro domains IPR001079 (Galectin, carbohydrate recognition domain), IPR013320 (Concanavalin A-like lectin/glucanase domain superfamily) | |||||
| Origin | From_laboratory | RS | ||||
| Species | Pristionchus pacificus | |||||
| Properties | Coding | CDS | ||||
| CDS_predicted_by | pristionchus.org | |||||
| Prediction_status | Partially_confirmed | |||||
| Visible | Gene | WBGene00118361 | ||||
| Corresponding_transcript | PPA28807.1 | |||||
| Corresponding_protein | PP73993 | |||||
| Corresponding_oligo_set | GPL14372_Probes_63187 | |||||
| GPL14372_Probes_63188 | ||||||
| GPL14372_Probes_63189 | ||||||
| Matching_cDNA | CN442620 | Inferred_automatically | transcript_builder.pl | |||
| CN442682 | Inferred_automatically | transcript_builder.pl | ||||
| FG099484 | Inferred_automatically | transcript_builder.pl | ||||
| FG094763 | Inferred_automatically | transcript_builder.pl | ||||
| CK928152 | Inferred_automatically | transcript_builder.pl | ||||
| Microarray_results | GPL14372_Probes_63187 | |||||
| GPL14372_Probes_63188 | ||||||
| GPL14372_Probes_63189 | ||||||
| RNASeq_FPKM | WBls:0000032 | 26.4505 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
| WBls:0000101 | 15.6239 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
| Remark | [171116 mh6] renamed from gene-UMM-S259-14.66 | Curator_confirmed | WBPerson4055 | |||
| Method | curated |
