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WormBase Tree Display for CDS: PPA28828

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Name Class

PPA28828SMapS_parentSequencePPA_ChrI
StructureSource_exons (19)
DB_infoDatabasepristionchus.orgcdsgene-UMM-S259-15.26
TREEFAMTREEFAM_IDTF315490
DB_remarkPPA-LGC-55 protein; contains similarity to Pfam domains PF02931 (Neurotransmitter-gated ion-channel ligand binding domain), PF02932 (Neurotransmitter-gated ion-channel transmembrane region); contains similarity to Interpro domains IPR036734 (Neurotransmitter-gated ion-channel ligand-binding domain superfamily), IPR006028 (Gamma-aminobutyric acid A receptor/Glycine receptor alpha), IPR006202 (Neurotransmitter-gated ion-channel ligand-binding domain), IPR036719 (Neurotransmitter-gated ion-channel transmembrane domain superfamily), IPR006201 (Neurotransmitter-gated ion-channel), IPR006029 (Neurotransmitter-gated ion-channel transmembrane domain)
OriginFrom_laboratoryRS
SpeciesPristionchus pacificus
PropertiesCodingCDS
CDS_predicted_bypristionchus.org
Prediction_statusPartially_confirmed
VisibleGeneWBGene00118382
Corresponding_transcriptPPA28828.1
Corresponding_proteinPP52150
Corresponding_oligo_setGPL14372_Probes_63250
GPL14372_Probes_63251
GPL14372_Probes_63252
GPL14372_Probes_63253
GPL14372_Probes_63254
Microarray_resultsGPL14372_Probes_63250
GPL14372_Probes_63251
GPL14372_Probes_63252
GPL14372_Probes_63253
GPL14372_Probes_63254
RNASeq_FPKMWBls:00000324.62573From_analysisRNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659
WBls:00001010From_analysisRNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656
Remark[171116 mh6] renamed from gene-UMM-S259-15.26Curator_confirmedWBPerson4055
Methodcurated