WormBase Tree Display for CDS: PPA28840
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PPA28840 | SMap | S_parent | Sequence | PPA_ChrI | ||
---|---|---|---|---|---|---|
Structure | Source_exons (20) | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S259-16.76 | ||
DB_remark | contains similarity to Pfam domains PF00887 (Acyl CoA binding protein), PF13897 (Golgi-dynamics membrane-trafficking); contains similarity to Interpro domains IPR035984 (Acyl-CoA binding protein superfamily), IPR036598 (GOLD domain superfamily), IPR014352 (FERM/acyl-CoA-binding protein superfamily), IPR009038 (GOLD domain), IPR000582 (Acyl-CoA-binding protein, ACBP) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Partially_confirmed | |||||
Visible | Gene | WBGene00118394 | ||||
Corresponding_transcript | PPA28840.1 | |||||
Corresponding_protein | PP59074 | |||||
Corresponding_oligo_set | GPL14372_Probes_15593 | |||||
GPL14372_Probes_63305 | ||||||
GPL14372_Probes_63308 | ||||||
Microarray_results | GPL14372_Probes_15593 | |||||
GPL14372_Probes_63305 | ||||||
GPL14372_Probes_63308 | ||||||
RNASeq_FPKM | WBls:0000032 | 9.77654 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 8.65993 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMM-S259-16.76 | Curator_confirmed | WBPerson4055 | |||
Method | curated |