WormBase Tree Display for CDS: PPA28847
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PPA28847 | SMap | S_parent | Sequence | PPA_ChrI | ||
---|---|---|---|---|---|---|
Structure | Source_exons (13) | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S259-16.89 | ||
DB_remark | PPA-FLP-6 protein; contains similarity to Pfam domain PF01581 (FMRFamide related peptide family); contains similarity to Interpro domains IPR002544 (FMRFamide-related peptide-like), IPR019734 (Tetratricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain superfamily) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Partially_confirmed | |||||
Visible | Gene | WBGene00118401 | ||||
Corresponding_transcript | PPA28847.1 | |||||
Corresponding_protein | PP59032 | |||||
Corresponding_oligo_set | GPL14372_Probes_63327 | |||||
GPL14372_Probes_63328 | ||||||
GPL14372_Probes_63329 | ||||||
GPL14372_Probes_63330 | ||||||
GPL14372_Probes_63334 | ||||||
GPL14372_Probes_63335 | ||||||
GPL14372_Probes_63336 | ||||||
Matching_cDNA | CN657091 | Inferred_automatically | transcript_builder.pl | |||
FG099959 | Inferred_automatically | transcript_builder.pl | ||||
FG099325 | Inferred_automatically | transcript_builder.pl | ||||
FG095952 | Inferred_automatically | transcript_builder.pl | ||||
FG100382 | Inferred_automatically | transcript_builder.pl | ||||
FG101086 | Inferred_automatically | transcript_builder.pl | ||||
Microarray_results | GPL14372_Probes_63327 | |||||
GPL14372_Probes_63328 | ||||||
GPL14372_Probes_63329 | ||||||
GPL14372_Probes_63330 | ||||||
GPL14372_Probes_63334 | ||||||
GPL14372_Probes_63335 | ||||||
GPL14372_Probes_63336 | ||||||
RNASeq_FPKM | WBls:0000032 | 32.8752 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 116.488 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMM-S259-16.89 | Curator_confirmed | WBPerson4055 | |||
Method | curated |