WormBase Tree Display for CDS: PPA28956
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| PPA28956 | SMap | S_parent | Sequence | PPA_ChrI | ||
|---|---|---|---|---|---|---|
| Structure | Source_exons (32) | |||||
| DB_info | Database | pristionchus.org | cds | gene-UMM-S259-2.2 | ||
| TREEFAM | TREEFAM_ID | TF313913 | ||||
| DB_remark | PPA-MRPL-4 protein; contains similarity to Pfam domains PF00069 (Protein kinase domain), PF00573 (Ribosomal protein L4/L1 family); contains similarity to Interpro domains IPR027084 (Protein kinase Mps1 family, catalytic domain), IPR011009 (Protein kinase-like domain superfamily), IPR023574 (Large ribosomal subunit protein uL4 domain superfamily), IPR002136 (Large ribosomal subunit protein uL4), IPR000719 (Protein kinase domain) | |||||
| Origin | From_laboratory | RS | ||||
| Species | Pristionchus pacificus | |||||
| Properties | Coding | CDS | ||||
| CDS_predicted_by | pristionchus.org | |||||
| Prediction_status | Partially_confirmed | |||||
| Visible | Gene | WBGene00118510 | ||||
| Corresponding_transcript | PPA28956.1 | |||||
| Corresponding_protein | PP72395 | |||||
| Corresponding_oligo_set | GPL14372_Probes_73424 | |||||
| GPL14372_Probes_73425 | ||||||
| GPL14372_Probes_73429 | ||||||
| GPL14372_Probes_73430 | ||||||
| Matching_cDNA | FG104358 | Inferred_automatically | transcript_builder.pl | |||
| Microarray_results | GPL14372_Probes_73424 | |||||
| GPL14372_Probes_73425 | ||||||
| GPL14372_Probes_73429 | ||||||
| GPL14372_Probes_73430 | ||||||
| RNASeq_FPKM | WBls:0000032 | 12.3111 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
| WBls:0000101 | 5.81556 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
| Remark | [171116 mh6] renamed from gene-UMM-S259-2.2 | Curator_confirmed | WBPerson4055 | |||
| Method | curated |
