WormBase Tree Display for CDS: PPA29022
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| PPA29022 | SMap | S_parent | Sequence | PPA_ChrI | ||
|---|---|---|---|---|---|---|
| Structure | Source_exons (63) | |||||
| DB_info | Database | pristionchus.org | cds | gene-UMM-S278-2.27 | ||
| TREEFAM | TREEFAM_ID | TF300390 | ||||
| DB_remark | contains similarity to Pfam domains PF00001 (7 transmembrane receptor (rhodopsin family)), PF00224 (Pyruvate kinase, barrel domain), PF02887 (Pyruvate kinase, alpha/beta domain); contains similarity to Interpro domains IPR015806 (Pyruvate kinase, insert domain superfamily), IPR017452 (GPCR, rhodopsin-like, 7TM), IPR040442 (Pyruvate kinase-like domain superfamily), IPR015795 (Pyruvate kinase, C-terminal), IPR001697 (Pyruvate kinase), IPR015813 (Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily), IPR011037 (Pyruvate kinase-like, insert domain superfamily), IPR036918 (Pyruvate kinase, C-terminal domain superfamily), IPR015793 (Pyruvate kinase, barrel) | |||||
| Origin | From_laboratory | RS | ||||
| Species | Pristionchus pacificus | |||||
| Properties | Coding | CDS | ||||
| CDS_predicted_by | pristionchus.org | |||||
| Prediction_status | Predicted | |||||
| Visible | Gene | WBGene00118576 | ||||
| Corresponding_transcript | PPA29022.1 | |||||
| Corresponding_protein | PP58545 | |||||
| Corresponding_oligo_set | GPL14372_Probes_73540 | |||||
| GPL14372_Probes_73541 | ||||||
| GPL14372_Probes_73544 | ||||||
| GPL14372_Probes_73546 | ||||||
| GPL14372_Probes_73547 | ||||||
| GPL14372_Probes_73549 | ||||||
| GPL14372_Probes_73550 | ||||||
| GPL14372_Probes_73551 | ||||||
| GPL14372_Probes_73552 | ||||||
| Microarray_results | GPL14372_Probes_73540 | |||||
| GPL14372_Probes_73541 | ||||||
| GPL14372_Probes_73544 | ||||||
| GPL14372_Probes_73546 | ||||||
| GPL14372_Probes_73547 | ||||||
| GPL14372_Probes_73549 | ||||||
| GPL14372_Probes_73550 | ||||||
| GPL14372_Probes_73551 | ||||||
| GPL14372_Probes_73552 | ||||||
| RNASeq_FPKM | WBls:0000032 | 1.85886 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
| WBls:0000101 | 0.731716 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
| Remark | [171116 mh6] renamed from gene-UMM-S278-2.27 | Curator_confirmed | WBPerson4055 | |||
| Method | curated |
