WormBase Tree Display for CDS: PPA29054
expand all nodes | collapse all nodes | view schema
PPA29054 | SMap | S_parent | Sequence | PPA_ChrI | ||
---|---|---|---|---|---|---|
Structure | Source_exons (39) | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S2844-19.23 | ||
DB_remark | contains similarity to Pfam domains PF00411 (Ribosomal protein S11), PF00651 (BTB/POZ domain); contains similarity to Interpro domains IPR000210 (BTB/POZ domain), IPR001971 (Small ribosomal subunit protein uS11), IPR036967 (Small ribosomal subunit protein uS11 superfamily), IPR011333 (SKP1/BTB/POZ domain superfamily) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Partially_confirmed | |||||
Start_not_found | 1 | |||||
Visible | Gene | WBGene00118608 | ||||
Corresponding_transcript | PPA29054.1 | |||||
Corresponding_protein | PP59767 | |||||
Corresponding_oligo_set (12) | ||||||
Matching_cDNA | FG102429 | Inferred_automatically | transcript_builder.pl | |||
FG100223 | Inferred_automatically | transcript_builder.pl | ||||
FG105868 | Inferred_automatically | transcript_builder.pl | ||||
Microarray_results (12) | ||||||
RNASeq_FPKM | WBls:0000032 | 10.62 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 8.36095 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMM-S2844-19.23 | Curator_confirmed | WBPerson4055 | |||
Method | curated |