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WormBase Tree Display for CDS: PPA29054

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Name Class

PPA29054SMapS_parentSequencePPA_ChrI
StructureSource_exons (39)
DB_infoDatabasepristionchus.orgcdsgene-UMM-S2844-19.23
DB_remarkcontains similarity to Pfam domains PF00411 (Ribosomal protein S11), PF00651 (BTB/POZ domain); contains similarity to Interpro domains IPR000210 (BTB/POZ domain), IPR001971 (Small ribosomal subunit protein uS11), IPR036967 (Small ribosomal subunit protein uS11 superfamily), IPR011333 (SKP1/BTB/POZ domain superfamily)
OriginFrom_laboratoryRS
SpeciesPristionchus pacificus
PropertiesCodingCDS
CDS_predicted_bypristionchus.org
Prediction_statusPartially_confirmed
Start_not_found1
VisibleGeneWBGene00118608
Corresponding_transcriptPPA29054.1
Corresponding_proteinPP59767
Corresponding_oligo_set (12)
Matching_cDNAFG102429Inferred_automaticallytranscript_builder.pl
FG100223Inferred_automaticallytranscript_builder.pl
FG105868Inferred_automaticallytranscript_builder.pl
Microarray_results (12)
RNASeq_FPKMWBls:000003210.62From_analysisRNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659
WBls:00001018.36095From_analysisRNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656
Remark[171116 mh6] renamed from gene-UMM-S2844-19.23Curator_confirmedWBPerson4055
Methodcurated