WormBase Tree Display for CDS: PPA29068
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PPA29068 | SMap | S_parent | Sequence | PPA_ChrI | ||
---|---|---|---|---|---|---|
Structure | Source_exons (18) | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S2844-18.47 | ||
DB_remark | contains similarity to Pfam domains PF00053 (Laminin EGF domain), PF16469 (Nematode polyprotein allergen ABA-1); contains similarity to Interpro domains IPR002049 (Laminin-type EGF domain), IPR038289 (DVA-1 superfamily), IPR032487 (Polyprotein allergen, nematode) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Predicted | |||||
Visible | Gene | WBGene00118622 | ||||
Corresponding_transcript | PPA29068.1 | |||||
Corresponding_protein | PP73490 | |||||
Corresponding_oligo_set | GPL14372_Probes_88180 | |||||
GPL14372_Probes_88181 | ||||||
GPL14372_Probes_88182 | ||||||
Microarray_results | GPL14372_Probes_88180 | |||||
GPL14372_Probes_88181 | ||||||
GPL14372_Probes_88182 | ||||||
RNASeq_FPKM | WBls:0000032 | 10.3822 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMM-S2844-18.47 | Curator_confirmed | WBPerson4055 | |||
Method | curated |