WormBase Tree Display for CDS: PPA29090
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PPA29090 | SMap | S_parent | Sequence | PPA_ChrI | ||
---|---|---|---|---|---|---|
Structure | Source_exons | 1 | 63 | |||
264 | 389 | |||||
664 | 737 | |||||
921 | 990 | |||||
1332 | 1413 | |||||
1569 | 1816 | |||||
DB_info | Database | pristionchus.org | cds | gene-UMS-S2844-17.46 | ||
DB_remark | contains similarity to Pfam domain PF00292 ('Paired box' domain); contains similarity to Interpro domains IPR001523 (Paired domain), IPR036388 (Winged helix-like DNA-binding domain superfamily), IPR009057 (Homeobox-like domain superfamily) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Predicted | |||||
Visible | Gene | WBGene00118644 | ||||
Corresponding_transcript | PPA29090.1 | |||||
Corresponding_protein | PP49431 | |||||
Corresponding_oligo_set | GPL14372_Probes_31195 | |||||
GPL14372_Probes_31196 | ||||||
GPL14372_Probes_31197 | ||||||
GPL14372_Probes_31198 | ||||||
Microarray_results | GPL14372_Probes_31195 | |||||
GPL14372_Probes_31196 | ||||||
GPL14372_Probes_31197 | ||||||
GPL14372_Probes_31198 | ||||||
RNASeq_FPKM | WBls:0000032 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMS-S2844-17.46 | Curator_confirmed | WBPerson4055 | |||
Method | curated |