WormBase Tree Display for CDS: PPA29100
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PPA29100 | SMap | S_parent | Sequence | PPA_ChrI | ||
---|---|---|---|---|---|---|
Structure | Source_exons (11) | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S2844-16.20 | ||
TREEFAM | TREEFAM_ID | TF354233 | ||||
DB_remark | contains similarity to Pfam domains PF01466 (Skp1 family, dimerisation domain), PF03931 (Skp1 family, tetramerisation domain); contains similarity to Interpro domains IPR001232 (S-phase kinase-associated protein 1-like), IPR036296 (SKP1-like, dimerisation domain superfamily), IPR016072 (SKP1 component, dimerisation), IPR011333 (SKP1/BTB/POZ domain superfamily), IPR016073 (SKP1 component, POZ domain) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Partially_confirmed | |||||
Visible | Gene | WBGene00118654 | ||||
Corresponding_transcript | PPA29100.1 | |||||
Corresponding_protein | PP56038 | |||||
Corresponding_oligo_set (11) | ||||||
Matching_cDNA | FG096649 | Inferred_automatically | transcript_builder.pl | |||
Microarray_results (11) | ||||||
RNASeq_FPKM | WBls:0000032 | 2.57879 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 9.13711 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMM-S2844-16.20 | Curator_confirmed | WBPerson4055 | |||
Method | curated |