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WormBase Tree Display for CDS: PPA29100

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Name Class

PPA29100SMapS_parentSequencePPA_ChrI
StructureSource_exons (11)
DB_infoDatabasepristionchus.orgcdsgene-UMM-S2844-16.20
TREEFAMTREEFAM_IDTF354233
DB_remarkcontains similarity to Pfam domains PF01466 (Skp1 family, dimerisation domain), PF03931 (Skp1 family, tetramerisation domain); contains similarity to Interpro domains IPR001232 (S-phase kinase-associated protein 1-like), IPR036296 (SKP1-like, dimerisation domain superfamily), IPR016072 (SKP1 component, dimerisation), IPR011333 (SKP1/BTB/POZ domain superfamily), IPR016073 (SKP1 component, POZ domain)
OriginFrom_laboratoryRS
SpeciesPristionchus pacificus
PropertiesCodingCDS
CDS_predicted_bypristionchus.org
Prediction_statusPartially_confirmed
VisibleGeneWBGene00118654
Corresponding_transcriptPPA29100.1
Corresponding_proteinPP56038
Corresponding_oligo_set (11)
Matching_cDNAFG096649Inferred_automaticallytranscript_builder.pl
Microarray_results (11)
RNASeq_FPKMWBls:00000322.57879From_analysisRNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659
WBls:00001019.13711From_analysisRNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656
Remark[171116 mh6] renamed from gene-UMM-S2844-16.20Curator_confirmedWBPerson4055
Methodcurated