WormBase Tree Display for CDS: PPA29192
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PPA29192 | SMap | S_parent | Sequence | PPA_ChrI | ||
---|---|---|---|---|---|---|
Structure | Source_exons | 1 | 90 | |||
244 | 300 | |||||
414 | 485 | |||||
568 | 642 | |||||
912 | 1019 | |||||
1098 | 1208 | |||||
1392 | 1484 | |||||
DB_info | Database | pristionchus.org | cds | gene-UMA-S278-7.13 | ||
TREEFAM | TREEFAM_ID | TF318560 | ||||
DB_remark | PPA-NCS-5 protein; contains similarity to Interpro domains IPR028846 (Recoverin family), IPR011992 (EF-hand domain pair) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Predicted | |||||
Visible | Gene | WBGene00118746 | ||||
Corresponding_transcript | PPA29192.1 | |||||
Corresponding_protein | PP54909 | |||||
Corresponding_oligo_set | GPL14372_Probes_73837 | |||||
GPL14372_Probes_73838 | ||||||
GPL14372_Probes_73839 | ||||||
Microarray_results | GPL14372_Probes_73837 | |||||
GPL14372_Probes_73838 | ||||||
GPL14372_Probes_73839 | ||||||
RNASeq_FPKM | WBls:0000032 | 64.0471 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 37.8352 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMA-S278-7.13 | Curator_confirmed | WBPerson4055 | |||
Method | curated |