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WormBase Tree Display for CDS: PPA29199

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Name Class

PPA29199SMapS_parentSequencePPA_ChrI
StructureSource_exons (56)
DB_infoDatabasepristionchus.orgcdsgene-UMM-S278-7.9
DB_remarkcontains similarity to Pfam domains PF03604 (DNA directed RNA polymerase, 7 kDa subunit), PF04950 (40S ribosome biogenesis protein Tsr1 and BMS1 C-terminal), PF08142 (AARP2CN (NUC121) domain), PF08560 (Protein of unknown function (DUF1757)); contains similarity to Interpro domains IPR012948 (AARP2CN), IPR013869 (Protein of unknown function DUF1757), IPR006591 (RNA polymerase archaeal subunit P/eukaryotic subunit RPABC4), IPR039761 (Ribosome biogenesis protein Bms1/Tsr1), IPR007034 (Ribosome biogenesis protein BMS1/TSR1, C-terminal)
OriginFrom_laboratoryRS
SpeciesPristionchus pacificus
PropertiesCodingCDS
CDS_predicted_bypristionchus.org
Prediction_statusPartially_confirmed
VisibleGeneWBGene00118753
Corresponding_transcriptPPA29199.1
Corresponding_proteinPP59483
Corresponding_oligo_set (21)
Microarray_results (21)
RNASeq_FPKMWBls:000003231.7788From_analysisRNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659
WBls:00001015.00374From_analysisRNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656
Remark[171116 mh6] renamed from gene-UMM-S278-7.9Curator_confirmedWBPerson4055
Methodcurated