WormBase Tree Display for CDS: PPA29199
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PPA29199 | SMap | S_parent | Sequence | PPA_ChrI | ||
---|---|---|---|---|---|---|
Structure | Source_exons (56) | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S278-7.9 | ||
DB_remark | contains similarity to Pfam domains PF03604 (DNA directed RNA polymerase, 7 kDa subunit), PF04950 (40S ribosome biogenesis protein Tsr1 and BMS1 C-terminal), PF08142 (AARP2CN (NUC121) domain), PF08560 (Protein of unknown function (DUF1757)); contains similarity to Interpro domains IPR012948 (AARP2CN), IPR013869 (Protein of unknown function DUF1757), IPR006591 (RNA polymerase archaeal subunit P/eukaryotic subunit RPABC4), IPR039761 (Ribosome biogenesis protein Bms1/Tsr1), IPR007034 (Ribosome biogenesis protein BMS1/TSR1, C-terminal) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Partially_confirmed | |||||
Visible | Gene | WBGene00118753 | ||||
Corresponding_transcript | PPA29199.1 | |||||
Corresponding_protein | PP59483 | |||||
Corresponding_oligo_set (21) | ||||||
Microarray_results (21) | ||||||
RNASeq_FPKM | WBls:0000032 | 31.7788 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 5.00374 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMM-S278-7.9 | Curator_confirmed | WBPerson4055 | |||
Method | curated |