WormBase Tree Display for CDS: PPA29250
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PPA29250 | SMap | S_parent | Sequence | PPA_ChrI | ||
---|---|---|---|---|---|---|
Structure | Source_exons | 1 | 26 | |||
142 | 214 | |||||
258 | 320 | |||||
448 | 507 | |||||
675 | 773 | |||||
957 | 1049 | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S278-10.17 | ||
TREEFAM | TREEFAM_ID | TF313853 | ||||
DB_remark | PPA-MIF-2 protein; contains similarity to Pfam domain PF01187 (Macrophage migration inhibitory factor (MIF)); contains similarity to Interpro domains IPR014347 (Tautomerase/MIF superfamily), IPR001398 (Macrophage migration inhibitory factor) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Partially_confirmed | |||||
Visible | Gene | WBGene00118804 | ||||
Corresponding_transcript | PPA29250.1 | |||||
Corresponding_protein | PP70388 | |||||
Corresponding_oligo_set | GPL14372_Probes_40907 | |||||
GPL14372_Probes_40908 | ||||||
Matching_cDNA | FG094954 | Inferred_automatically | transcript_builder.pl | |||
FG096404 | Inferred_automatically | transcript_builder.pl | ||||
Microarray_results | GPL14372_Probes_40907 | |||||
GPL14372_Probes_40908 | ||||||
RNASeq_FPKM | WBls:0000032 | 30.9145 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 97.4142 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMM-S278-10.17 | Curator_confirmed | WBPerson4055 | |||
Method | curated |