WormBase Tree Display for CDS: PPA29252
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PPA29252 | SMap | S_parent | Sequence | PPA_ChrI | ||
---|---|---|---|---|---|---|
Structure | Source_exons (41) | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S278-10.45 | ||
TREEFAM | TREEFAM_ID | TF313387 | ||||
DB_remark | PPA-CASH-1 protein; contains similarity to Pfam domains PF00178 (Ets-domain), PF00400 (WD domain, G-beta repeat), PF08232 (Striatin family); contains similarity to Interpro domains IPR011009 (Protein kinase-like domain superfamily), IPR013258 (Striatin, N-terminal), IPR001680 (WD40 repeat), IPR036390 (Winged helix DNA-binding domain superfamily), IPR036388 (Winged helix-like DNA-binding domain superfamily), IPR000418 (Ets domain), IPR036322 (WD40-repeat-containing domain superfamily), IPR020472 (G-protein beta WD-40 repeat), IPR015943 (WD40/YVTN repeat-like-containing domain superfamily) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Predicted | |||||
Visible | Gene | WBGene00118806 | ||||
Corresponding_transcript | PPA29252.1 | |||||
Corresponding_protein | PP66701 | |||||
Corresponding_oligo_set | GPL14372_Probes_3511 | |||||
GPL14372_Probes_3512 | ||||||
GPL14372_Probes_3513 | ||||||
GPL14372_Probes_3514 | ||||||
GPL14372_Probes_3515 | ||||||
Microarray_results | GPL14372_Probes_3511 | |||||
GPL14372_Probes_3512 | ||||||
GPL14372_Probes_3513 | ||||||
GPL14372_Probes_3514 | ||||||
GPL14372_Probes_3515 | ||||||
RNASeq_FPKM | WBls:0000032 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMM-S278-10.45 | Curator_confirmed | WBPerson4055 | |||
Method | curated |