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WormBase Tree Display for CDS: PPA29252

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Name Class

PPA29252SMapS_parentSequencePPA_ChrI
StructureSource_exons (41)
DB_infoDatabasepristionchus.orgcdsgene-UMM-S278-10.45
TREEFAMTREEFAM_IDTF313387
DB_remarkPPA-CASH-1 protein; contains similarity to Pfam domains PF00178 (Ets-domain), PF00400 (WD domain, G-beta repeat), PF08232 (Striatin family); contains similarity to Interpro domains IPR011009 (Protein kinase-like domain superfamily), IPR013258 (Striatin, N-terminal), IPR001680 (WD40 repeat), IPR036390 (Winged helix DNA-binding domain superfamily), IPR036388 (Winged helix-like DNA-binding domain superfamily), IPR000418 (Ets domain), IPR036322 (WD40-repeat-containing domain superfamily), IPR020472 (G-protein beta WD-40 repeat), IPR015943 (WD40/YVTN repeat-like-containing domain superfamily)
OriginFrom_laboratoryRS
SpeciesPristionchus pacificus
PropertiesCodingCDS
CDS_predicted_bypristionchus.org
Prediction_statusPredicted
VisibleGeneWBGene00118806
Corresponding_transcriptPPA29252.1
Corresponding_proteinPP66701
Corresponding_oligo_setGPL14372_Probes_3511
GPL14372_Probes_3512
GPL14372_Probes_3513
GPL14372_Probes_3514
GPL14372_Probes_3515
Microarray_resultsGPL14372_Probes_3511
GPL14372_Probes_3512
GPL14372_Probes_3513
GPL14372_Probes_3514
GPL14372_Probes_3515
RNASeq_FPKMWBls:00000320From_analysisRNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659
WBls:00001010From_analysisRNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656
Remark[171116 mh6] renamed from gene-UMM-S278-10.45Curator_confirmedWBPerson4055
Methodcurated