WormBase Tree Display for CDS: PPA30246
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PPA30246 | SMap | S_parent | Sequence | PPA_ChrI | ||
---|---|---|---|---|---|---|
Structure | Source_exons | 1 | 58 | |||
695 | 800 | |||||
2070 | 2123 | |||||
2390 | 2450 | |||||
2654 | 2689 | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S57-41.10 | ||
DB_remark | contains similarity to Pfam domain PF15389 (Domain of unknown function (DUF4612)); contains similarity to Interpro domain IPR027967 (Protein of unknown function DUF4612) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Confirmed | |||||
Visible | Gene | WBGene00203114 | ||||
Corresponding_transcript | PPA30246.1 | |||||
Corresponding_protein | PP71014 | |||||
Corresponding_oligo_set | GPL14372_Probes_55600 | |||||
GPL14372_Probes_55602 | ||||||
Matching_cDNA | FG098460 | Inferred_automatically | transcript_builder.pl | |||
Microarray_results | GPL14372_Probes_55600 | |||||
GPL14372_Probes_55602 | ||||||
RNASeq_FPKM | WBls:0000032 | 53.4481 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMM-S57-41.10 | Curator_confirmed | WBPerson4055 | |||
Method | curated |