WormBase Tree Display for CDS: PPA30358
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| PPA30358 | SMap | S_parent | Sequence | PPA_ChrI | ||
|---|---|---|---|---|---|---|
| Structure | Source_exons (39) | |||||
| DB_info | Database | pristionchus.org | cds | gene-UMM-S71-42.52 | ||
| DB_remark | contains similarity to Pfam domains PF01055 (Glycosyl hydrolases family 31 TIM-barrel domain), PF13802 (Glycosyl hydrolase 31 N-terminal galactose mutarotase-like domain); contains similarity to Interpro domains IPR017853 (Glycoside hydrolase superfamily), IPR006600 (HTH CenpB-type DNA-binding domain), IPR000322 (Glycoside hydrolase family 31, TIM barrel domain), IPR011013 (Galactose mutarotase-like domain superfamily), IPR013780 (Glycosyl hydrolase, all-beta), IPR025887 (Glycoside hydrolase family 31, N-terminal domain) | |||||
| Origin | From_laboratory | RS | ||||
| Species | Pristionchus pacificus | |||||
| Properties | Coding | CDS | ||||
| CDS_predicted_by | pristionchus.org | |||||
| Prediction_status | Partially_confirmed | |||||
| Visible | Gene | WBGene00203226 | ||||
| Corresponding_transcript | PPA30358.1 | |||||
| Corresponding_protein | PP73794 | |||||
| Corresponding_oligo_set | GPL14372_Probes_10361 | |||||
| GPL14372_Probes_10363 | ||||||
| GPL14372_Probes_10364 | ||||||
| GPL14372_Probes_10365 | ||||||
| GPL14372_Probes_10367 | ||||||
| GPL14372_Probes_10368 | ||||||
| GPL14372_Probes_10369 | ||||||
| GPL14372_Probes_10370 | ||||||
| GPL14372_Probes_10371 | ||||||
| GPL14372_Probes_10372 | ||||||
| Matching_cDNA | FG099572 | Inferred_automatically | transcript_builder.pl | |||
| FG100646 | Inferred_automatically | transcript_builder.pl | ||||
| Microarray_results | GPL14372_Probes_10361 | |||||
| GPL14372_Probes_10363 | ||||||
| GPL14372_Probes_10364 | ||||||
| GPL14372_Probes_10365 | ||||||
| GPL14372_Probes_10367 | ||||||
| GPL14372_Probes_10368 | ||||||
| GPL14372_Probes_10369 | ||||||
| GPL14372_Probes_10370 | ||||||
| GPL14372_Probes_10371 | ||||||
| GPL14372_Probes_10372 | ||||||
| RNASeq_FPKM | WBls:0000032 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
| WBls:0000101 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
| Remark | [171116 mh6] renamed from gene-UMM-S71-42.52 | Curator_confirmed | WBPerson4055 | |||
| Method | curated |
