WormBase Tree Display for CDS: PPA30875
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| PPA30875 | Evidence | Curator_confirmed | WBPerson4055 | |||
|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | PPA_ChrII | |||
| Structure | Source_exons | 1 | 64 | |||
| 111 | 265 | |||||
| 309 | 378 | |||||
| 425 | 714 | |||||
| 758 | 864 | |||||
| 911 | 1007 | |||||
| 1051 | 1153 | |||||
| 1197 | 1314 | |||||
| 1376 | 1460 | |||||
| 1508 | 1635 | |||||
| 1680 | 1778 | |||||
| 1824 | 1962 | |||||
| 2008 | 2076 | |||||
| 2124 | 2236 | |||||
| 2284 | 2346 | |||||
| 2399 | 2474 | |||||
| 2558 | 2729 | |||||
| 2775 | 2920 | |||||
| 2967 | 3083 | |||||
| 3126 | 3271 | |||||
| 3320 | 3473 | |||||
| 3536 | 3613 | |||||
| 3658 | 3792 | |||||
| 3837 | 3905 | |||||
| 3947 | 4030 | |||||
| DB_info | Database | pristionchus.org | cds | gene-UMM-S421-2.203 | ||
| DB_remark | PPA-UNC-104.3 protein; contains similarity to Pfam domains PF00169 (PH domain), PF12423 (Kinesin protein 1B), PF12473 (Kinesin protein); contains similarity to Interpro domains IPR022140 (Kinesin-like KIF1-type), IPR022164 (Kinesin-like), IPR001849 (Pleckstrin homology domain), IPR011993 (PH-like domain superfamily), IPR027640 (Kinesin-like protein) | |||||
| Origin | From_laboratory | RS | ||||
| Species | Pristionchus pacificus | |||||
| Properties | Coding | CDS | ||||
| CDS_predicted_by | pristionchus.org | |||||
| Prediction_status | Partially_confirmed | |||||
| Visible | Gene | WBGene00203741 | ||||
| Corresponding_transcript | PPA30875.1 | |||||
| Corresponding_protein | PP75450 | |||||
| Corresponding_oligo_set | GPL14372_Probes_15918 | |||||
| GPL14372_Probes_15919 | ||||||
| GPL14372_Probes_15921 | ||||||
| GPL14372_Probes_15922 | ||||||
| Microarray_results | GPL14372_Probes_15918 | |||||
| GPL14372_Probes_15919 | ||||||
| GPL14372_Probes_15921 | ||||||
| GPL14372_Probes_15922 | ||||||
| RNASeq_FPKM | WBls:0000032 | 44.6825 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
| WBls:0000101 | 38.5064 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
| Last_reviewed | 11 Sep 2019 14:14:33 | WBPerson4055 | ||||
| Remark | [171116 mh6] renamed from gene-UMM-S421-2.203 | Curator_confirmed | WBPerson4055 | |||
| [190911 mh6] This CDS has been updated based on the RNAseq data. | Curator_confirmed | WBPerson4055 | ||||
| From_analysis | RNASeq | |||||
| Method | curated |
