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WormBase Tree Display for CDS: PPA31004

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Name Class

PPA31004SMapS_parentSequencePPA_ChrI
StructureSource_exons1135
310548
698703
773926
10211089
DB_infoDatabasepristionchus.orgcdsgene-UMM-S57-3.23
DB_remarkcontains similarity to Pfam domains PF00281 (Ribosomal protein L5), PF00673 (ribosomal L5P family C-terminus); contains similarity to Interpro domains IPR031309 (Large ribosomal subunit protein uL5, C-terminal), IPR031310 (Large ribosomal subunit protein uL5, N-terminal), IPR022803 (Large ribosomal subunit protein uL5 domain superfamily), IPR002132 (Large ribosomal subunit protein uL5)
OriginFrom_laboratoryRS
SpeciesPristionchus pacificus
PropertiesCodingCDS
CDS_predicted_bypristionchus.org
Prediction_statusPartially_confirmed
VisibleGeneWBGene00203869
Corresponding_transcriptPPA31004.1
Corresponding_proteinPP65218
Corresponding_oligo_setGPL14372_Probes_78679
GPL14372_Probes_78680
GPL14372_Probes_78681
GPL14372_Probes_78682
GPL14372_Probes_78683
Matching_cDNAAW114531Inferred_automaticallytranscript_builder.pl
BM565961Inferred_automaticallytranscript_builder.pl
AI989245Inferred_automaticallytranscript_builder.pl
AW114659Inferred_automaticallytranscript_builder.pl
Microarray_resultsGPL14372_Probes_78679
GPL14372_Probes_78680
GPL14372_Probes_78681
GPL14372_Probes_78682
GPL14372_Probes_78683
RNASeq_FPKMWBls:000003216.1317From_analysisRNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659
WBls:000010119.0594From_analysisRNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656
Remark[171116 mh6] renamed from gene-UMM-S57-3.23Curator_confirmedWBPerson4055
Methodcurated