WormBase Tree Display for CDS: PPA31004
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PPA31004 | SMap | S_parent | Sequence | PPA_ChrI | ||
---|---|---|---|---|---|---|
Structure | Source_exons | 1 | 135 | |||
310 | 548 | |||||
698 | 703 | |||||
773 | 926 | |||||
1021 | 1089 | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S57-3.23 | ||
DB_remark | contains similarity to Pfam domains PF00281 (Ribosomal protein L5), PF00673 (ribosomal L5P family C-terminus); contains similarity to Interpro domains IPR031309 (Large ribosomal subunit protein uL5, C-terminal), IPR031310 (Large ribosomal subunit protein uL5, N-terminal), IPR022803 (Large ribosomal subunit protein uL5 domain superfamily), IPR002132 (Large ribosomal subunit protein uL5) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Partially_confirmed | |||||
Visible | Gene | WBGene00203869 | ||||
Corresponding_transcript | PPA31004.1 | |||||
Corresponding_protein | PP65218 | |||||
Corresponding_oligo_set | GPL14372_Probes_78679 | |||||
GPL14372_Probes_78680 | ||||||
GPL14372_Probes_78681 | ||||||
GPL14372_Probes_78682 | ||||||
GPL14372_Probes_78683 | ||||||
Matching_cDNA | AW114531 | Inferred_automatically | transcript_builder.pl | |||
BM565961 | Inferred_automatically | transcript_builder.pl | ||||
AI989245 | Inferred_automatically | transcript_builder.pl | ||||
AW114659 | Inferred_automatically | transcript_builder.pl | ||||
Microarray_results | GPL14372_Probes_78679 | |||||
GPL14372_Probes_78680 | ||||||
GPL14372_Probes_78681 | ||||||
GPL14372_Probes_78682 | ||||||
GPL14372_Probes_78683 | ||||||
RNASeq_FPKM | WBls:0000032 | 16.1317 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 19.0594 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMM-S57-3.23 | Curator_confirmed | WBPerson4055 | |||
Method | curated |