WormBase Tree Display for CDS: PPA31083
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PPA31083 | SMap | S_parent | Sequence | PPA_ChrII | ||
---|---|---|---|---|---|---|
Structure | Source_exons (15) | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S273-4.24 | ||
DB_remark | PPA-CEH-38 protein; contains similarity to Pfam domains PF00046 (Homeodomain), PF02376 (CUT domain); contains similarity to Interpro domains IPR003350 (CUT domain), IPR001356 (Homeobox domain), IPR010982 (Lambda repressor-like, DNA-binding domain superfamily), IPR009057 (Homeobox-like domain superfamily) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Predicted | |||||
Visible | Gene | WBGene00203948 | ||||
Corresponding_transcript | PPA31083.1 | |||||
Corresponding_protein | PP57357 | |||||
Corresponding_oligo_set | GPL14372_Probes_25302 | |||||
GPL14372_Probes_25304 | ||||||
GPL14372_Probes_25305 | ||||||
GPL14372_Probes_25306 | ||||||
Microarray_results | GPL14372_Probes_25302 | |||||
GPL14372_Probes_25304 | ||||||
GPL14372_Probes_25305 | ||||||
GPL14372_Probes_25306 | ||||||
RNASeq_FPKM | WBls:0000032 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMM-S273-4.24 | Curator_confirmed | WBPerson4055 | |||
Method | curated |