WormBase Tree Display for CDS: PPA31949
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| PPA31949 | SMap | S_parent | Sequence | PPA_ChrI | ||
|---|---|---|---|---|---|---|
| Structure | Source_exons (108) | |||||
| DB_info | Database | pristionchus.org | cds | gene-UMM-S71-41.33 | ||
| DB_remark | contains similarity to Pfam domains PF02434 (Fringe-like), PF07019 (EMC6); contains similarity to Interpro domains IPR029008 (ER membrane protein complex subunit 6-like), IPR013087 (Zinc finger C2H2-type), IPR003378 (Fringe-like, glycosyltransferase domain) | |||||
| Origin | From_laboratory | RS | ||||
| Species | Pristionchus pacificus | |||||
| Properties | Coding | CDS | ||||
| CDS_predicted_by | pristionchus.org | |||||
| Prediction_status | Partially_confirmed | |||||
| Visible | Gene | WBGene00204813 | ||||
| Corresponding_transcript | PPA31949.1 | |||||
| Corresponding_protein | PP65116 | |||||
| Corresponding_oligo_set (17) | ||||||
| Microarray_results (17) | ||||||
| RNASeq_FPKM | WBls:0000032 | 0.226386 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
| WBls:0000101 | 0.802004 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
| Remark | [171116 mh6] renamed from gene-UMM-S71-41.33 | Curator_confirmed | WBPerson4055 | |||
| Method | curated |
