WormBase Tree Display for CDS: PPA32231
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PPA32231 | SMap | S_parent | Sequence | PPA_ChrI | ||
---|---|---|---|---|---|---|
Structure | Source_exons | 1 | 168 | |||
278 | 339 | |||||
3872 | 4026 | |||||
4159 | 4263 | |||||
4401 | 4470 | |||||
4551 | 4663 | |||||
4888 | 5096 | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S139-7.29 | ||
DB_remark | PPA-HST-3.2 protein; contains similarity to Pfam domain PF00685 (Sulfotransferase domain); contains similarity to Interpro domains IPR000863 (Sulfotransferase domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR037359 (Heparan sulfate sulfotransferase) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Predicted | |||||
Visible | Gene | WBGene00205092 | ||||
Corresponding_transcript | PPA32231.1 | |||||
Corresponding_protein | PP59253 | |||||
Corresponding_oligo_set | GPL14372_Probes_33932 | |||||
GPL14372_Probes_33933 | ||||||
GPL14372_Probes_46348 | ||||||
GPL14372_Probes_46349 | ||||||
GPL14372_Probes_46350 | ||||||
GPL14372_Probes_46351 | ||||||
Microarray_results | GPL14372_Probes_33932 | |||||
GPL14372_Probes_33933 | ||||||
GPL14372_Probes_46348 | ||||||
GPL14372_Probes_46349 | ||||||
GPL14372_Probes_46350 | ||||||
GPL14372_Probes_46351 | ||||||
RNASeq_FPKM | WBls:0000032 | 4.75366 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 5.61515 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMM-S139-7.29 | Curator_confirmed | WBPerson4055 | |||
Method | curated |