WormBase Tree Display for CDS: PPA33251
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PPA33251 | SMap | S_parent | Sequence | PPA_ChrIV | ||
---|---|---|---|---|---|---|
Structure | Source_exons (20) | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S2840-46.66 | ||
DB_remark | contains similarity to Pfam domains PF00060 (Ligand-gated ion channel), PF10613 (Ligated ion channel L-glutamate- and glycine-binding site); contains similarity to Interpro domains IPR001320 (Ionotropic glutamate receptor, C-terminal), IPR001508 (Ionotropic glutamate receptor, metazoa), IPR019594 (Ionotropic glutamate receptor, L-glutamate and glycine-binding domain) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Predicted | |||||
Visible | Gene | WBGene00206111 | ||||
Corresponding_transcript | PPA33251.1 | |||||
Corresponding_protein | PP53692 | |||||
Corresponding_oligo_set | GPL14372_Probes_6839 | |||||
GPL14372_Probes_6841 | ||||||
GPL14372_Probes_6842 | ||||||
GPL14372_Probes_6843 | ||||||
Microarray_results | GPL14372_Probes_6839 | |||||
GPL14372_Probes_6841 | ||||||
GPL14372_Probes_6842 | ||||||
GPL14372_Probes_6843 | ||||||
RNASeq_FPKM | WBls:0000032 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMM-S2840-46.66 | Curator_confirmed | WBPerson4055 | |||
Method | curated |