WormBase Tree Display for CDS: PPA33279
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PPA33279 | SMap | S_parent | Sequence | PPA_ChrI | ||
---|---|---|---|---|---|---|
Structure | Source_exons | 1 | 92 | |||
572 | 641 | |||||
1997 | 2111 | |||||
3168 | 3286 | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S2844-19.51 | ||
DB_remark | contains similarity to Pfam domain PF04828 (Glutathione-dependent formaldehyde-activating enzyme); contains similarity to Interpro domains IPR011057 (Mss4-like superfamily), IPR006913 (CENP-V/GFA domain) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Partially_confirmed | |||||
Visible | Gene | WBGene00206139 | ||||
Corresponding_transcript | PPA33279.1 | |||||
Corresponding_protein | PP64341 | |||||
Corresponding_oligo_set | GPL14372_Probes_88156 | |||||
GPL14372_Probes_88158 | ||||||
Matching_cDNA | FG098567 | Inferred_automatically | transcript_builder.pl | |||
Microarray_results | GPL14372_Probes_88156 | |||||
GPL14372_Probes_88158 | ||||||
RNASeq_FPKM | WBls:0000032 | 13.8788 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 32.7927 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMM-S2844-19.51 | Curator_confirmed | WBPerson4055 | |||
Method | curated |