WormBase Tree Display for CDS: PPA33530
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PPA33530 | SMap | S_parent | Sequence | PPA_ChrI | ||
---|---|---|---|---|---|---|
Structure | Source_exons | 1 | 39 | |||
122 | 211 | |||||
288 | 353 | |||||
416 | 493 | |||||
648 | 738 | |||||
900 | 964 | |||||
DB_info | Database | pristionchus.org | cds | gene-UMA-S7-52.43 | ||
DB_remark | PPA-DIB-1.2 protein; contains similarity to Pfam domain PF02966 (Mitosis protein DIM1); contains similarity to Interpro domains IPR004123 (Dim1 family), IPR036249 (Thioredoxin-like superfamily) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Confirmed | |||||
Visible | Gene | WBGene00271899 | ||||
Corresponding_transcript | PPA33530.1 | |||||
Corresponding_protein | PP07032 | |||||
Corresponding_oligo_set | GPL14372_Probes_53410 | |||||
Matching_cDNA | FG101419 | Inferred_automatically | transcript_builder.pl | |||
FE931698 | Inferred_automatically | transcript_builder.pl | ||||
FG095716 | Inferred_automatically | transcript_builder.pl | ||||
Microarray_results | GPL14372_Probes_53410 | |||||
RNASeq_FPKM | WBls:0000032 | 149.154 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 18.5495 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Method | curated |