WormBase Tree Display for CDS: PPA33543
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PPA33543 | SMap | S_parent | Sequence | PPA_ChrI | ||
---|---|---|---|---|---|---|
Structure | Source_exons | 1 | 89 | |||
650 | 715 | |||||
1675 | 1770 | |||||
2406 | 2557 | |||||
3179 | 3309 | |||||
5526 | 5620 | |||||
5980 | 6023 | |||||
6616 | 6722 | |||||
7035 | 7181 | |||||
7455 | 7526 | |||||
DB_info | Database | pristionchus.org | cds | gene-UMA-S7-75.44 | ||
DB_remark | PPA-DHHC-10 protein; contains similarity to Pfam domain PF01529 (DHHC palmitoyltransferase); contains similarity to Interpro domain IPR001594 (Palmitoyltransferase, DHHC domain) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Partially_confirmed | |||||
Visible | Gene | WBGene00271912 | ||||
Corresponding_transcript | PPA33543.1 | |||||
Corresponding_protein | PP70321 | |||||
Corresponding_oligo_set | GPL14372_Probes_60111 | |||||
GPL14372_Probes_60112 | ||||||
Matching_cDNA | EB184019 | Inferred_automatically | transcript_builder.pl | |||
Microarray_results | GPL14372_Probes_60111 | |||||
GPL14372_Probes_60112 | ||||||
RNASeq_FPKM | WBls:0000032 | 13.5076 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 11.9656 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Method | curated |