WormBase Tree Display for CDS: PPA33554
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PPA33554 | SMap | S_parent | Sequence | PPA_ChrI | ||
---|---|---|---|---|---|---|
Structure | Source_exons | 1 | 9 | |||
375 | 445 | |||||
552 | 612 | |||||
1039 | 1149 | |||||
1343 | 1392 | |||||
1536 | 1593 | |||||
DB_info | Database | pristionchus.org | cds | gene-UMA-S7-88.34 | ||
DB_remark | contains similarity to Pfam domain PF00466 (Ribosomal protein L10); contains similarity to Interpro domains IPR043141 (Large ribosomal subunit protein uL10-like domain superfamily), IPR001790 (Large ribosomal subunit protein uL10), IPR039637 (CCR4-NOT transcription complex subunit 7/8/Pop2), IPR012337 (Ribonuclease H-like superfamily) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Predicted | |||||
Visible | Gene | WBGene00271923 | ||||
Corresponding_transcript | PPA33554.1 | |||||
Corresponding_protein | PP65600 | |||||
RNASeq_FPKM | WBls:0000032 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Method | curated |