WormBase Tree Display for CDS: PPA33577
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| PPA33577 | SMap | S_parent | Sequence | PPA_ChrII | ||
|---|---|---|---|---|---|---|
| Structure | Source_exons (11) | |||||
| DB_info | Database | pristionchus.org | cds | gene-UMA-S10-13.20 | ||
| DB_remark | contains similarity to Pfam domains PF01398 (JAB1/Mov34/MPN/PAD-1 ubiquitin protease), PF13012 (Maintenance of mitochondrial structure and function); contains similarity to Interpro domains IPR000555 (JAB1/MPN/MOV34 metalloenzyme domain), IPR035299 (), IPR024969 (EIF3F/CSN6-like, C-terminal) | |||||
| Origin | From_laboratory | RS | ||||
| Species | Pristionchus pacificus | |||||
| Properties | Coding | CDS | ||||
| CDS_predicted_by | pristionchus.org | |||||
| Prediction_status | Predicted | |||||
| Visible | Gene | WBGene00271946 | ||||
| Corresponding_transcript | PPA33577.1 | |||||
| Corresponding_protein | PP51117 | |||||
| Corresponding_oligo_set | GPL14372_Probes_82225 | |||||
| Microarray_results | GPL14372_Probes_82225 | |||||
| RNASeq_FPKM | WBls:0000032 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
| WBls:0000101 | 5.18041 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
| Method | curated |
