WormBase Tree Display for CDS: PPA33601
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PPA33601 | SMap | S_parent | Sequence | PPA_ChrII | ||
---|---|---|---|---|---|---|
Structure | Source_exons | 1 | 37 | |||
270 | 364 | |||||
419 | 472 | |||||
595 | 678 | |||||
903 | 1003 | |||||
1248 | 1347 | |||||
1524 | 1621 | |||||
1750 | 1813 | |||||
1955 | 2020 | |||||
2065 | 2172 | |||||
DB_info | Database | pristionchus.org | cds | gene-UMA-S10-48.21 | ||
DB_remark | contains similarity to Pfam domain PF13561 (Enoyl-(Acyl carrier protein) reductase); contains similarity to Interpro domains IPR036291 (NAD(P)-binding domain superfamily), IPR002347 (Short-chain dehydrogenase/reductase SDR) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Predicted | |||||
Visible | Gene | WBGene00271970 | ||||
Corresponding_transcript | PPA33601.1 | |||||
Corresponding_protein | PP29460 | |||||
Corresponding_oligo_set | GPL14372_Probes_5621 | |||||
GPL14372_Probes_5622 | ||||||
Microarray_results | GPL14372_Probes_5621 | |||||
GPL14372_Probes_5622 | ||||||
RNASeq_FPKM | WBls:0000032 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Method | curated |