WormBase Tree Display for CDS: PPA33609
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PPA33609 | SMap | S_parent | Sequence | PPA_ChrII | ||
---|---|---|---|---|---|---|
Structure | Source_exons | 1 | 63 | |||
148 | 360 | |||||
DB_info | Database | pristionchus.org | cds | gene-UMA-S10-64.14 | ||
DB_remark | contains similarity to Pfam domain PF11976 (Ubiquitin-2 like Rad60 SUMO-like); contains similarity to Interpro domains IPR029071 (Ubiquitin-like domain superfamily), IPR022617 (Rad60/SUMO-like domain), IPR000626 (Ubiquitin-like domain) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Partially_confirmed | |||||
Visible | Gene | WBGene00271978 | ||||
Corresponding_transcript | PPA33609.1 | |||||
Corresponding_protein | PP15964 | |||||
Matching_cDNA | BM566429 | Inferred_automatically | transcript_builder.pl | |||
RNASeq_FPKM | WBls:0000032 | 40.1324 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 47.5102 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Method | curated |