WormBase Tree Display for CDS: PPA33750
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PPA33750 | SMap | S_parent | Sequence | PPA_ChrI | ||
---|---|---|---|---|---|---|
Structure | Source_exons | 1 | 285 | |||
329 | 448 | |||||
493 | 618 | |||||
661 | 752 | |||||
804 | 843 | |||||
DB_info | Database | pristionchus.org | cds | gene-UMA-S57-10.23 | ||
DB_remark | contains similarity to Pfam domain PF00188 (Cysteine-rich secretory protein family); contains similarity to Interpro domains IPR014044 (CAP domain), IPR002413 (Venom allergen 5-like), IPR035940 (CAP superfamily), IPR001283 (Cysteine-rich secretory protein-related) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Predicted | |||||
Visible | Gene | WBGene00272119 | ||||
Corresponding_transcript | PPA33750.1 | |||||
Corresponding_protein | PP56594 | |||||
Corresponding_oligo_set | GPL14372_Probes_68613 | |||||
GPL14372_Probes_68614 | ||||||
GPL14372_Probes_68615 | ||||||
Microarray_results | GPL14372_Probes_68613 | |||||
GPL14372_Probes_68614 | ||||||
GPL14372_Probes_68615 | ||||||
RNASeq_FPKM | WBls:0000032 | 49.1033 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Method | curated |