WormBase Tree Display for CDS: PPA33764
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PPA33764 | SMap | S_parent | Sequence | PPA_ChrI | ||
---|---|---|---|---|---|---|
Structure | Source_exons | 1 | 99 | |||
375 | 445 | |||||
498 | 561 | |||||
942 | 1022 | |||||
1582 | 1701 | |||||
DB_info | Database | pristionchus.org | cds | gene-UMA-S57-30.29 | ||
DB_remark | PPA-TRPP-1 protein; contains similarity to Pfam domain PF04099 (Sybindin-like family); contains similarity to Interpro domains IPR011012 (Longin-like domain superfamily), IPR007233 (Trafficking protein particle complex subunit) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Predicted | |||||
Visible | Gene | WBGene00272133 | ||||
Corresponding_transcript | PPA33764.1 | |||||
Corresponding_protein | PP56688 | |||||
Corresponding_oligo_set | GPL14372_Probes_55251 | |||||
GPL14372_Probes_55253 | ||||||
GPL14372_Probes_55254 | ||||||
Microarray_results | GPL14372_Probes_55251 | |||||
GPL14372_Probes_55253 | ||||||
GPL14372_Probes_55254 | ||||||
RNASeq_FPKM | WBls:0000032 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 82.1216 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Method | curated |