WormBase Tree Display for CDS: PPA33816
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PPA33816 | SMap | S_parent | Sequence | PPA_ChrIII | ||
---|---|---|---|---|---|---|
Structure | Source_exons | 1 | 165 | |||
321 | 455 | |||||
619 | 746 | |||||
831 | 979 | |||||
1075 | 1152 | |||||
1244 | 1358 | |||||
1703 | 1807 | |||||
1888 | 1950 | |||||
2151 | 2268 | |||||
2388 | 2462 | |||||
DB_info | Database | pristionchus.org | cds | gene-UMA-S66-2.57 | ||
DB_remark | contains similarity to Pfam domain PF13909 (C2H2-type zinc-finger domain); contains similarity to Interpro domains IPR036236 (Zinc finger C2H2 superfamily), IPR013087 (Zinc finger C2H2-type) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Predicted | |||||
Visible | Gene | WBGene00272185 | ||||
Corresponding_transcript | PPA33816.1 | |||||
Corresponding_protein | PP61228 | |||||
Corresponding_oligo_set | GPL14372_Probes_66974 | |||||
GPL14372_Probes_66976 | ||||||
GPL14372_Probes_66977 | ||||||
Microarray_results | GPL14372_Probes_66974 | |||||
GPL14372_Probes_66976 | ||||||
GPL14372_Probes_66977 | ||||||
RNASeq_FPKM | WBls:0000032 | 10.4362 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 12.3265 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Method | curated |