WormBase Tree Display for CDS: PPA33867
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| PPA33867 | SMap | S_parent | Sequence | PPA_ChrI | ||
|---|---|---|---|---|---|---|
| Structure | Source_exons (13) | |||||
| DB_info | Database | pristionchus.org | cds | gene-UMA-S71-33.0 | ||
| DB_remark | contains similarity to Pfam domains PF00198 (2-oxoacid dehydrogenases acyltransferase (catalytic domain)), PF00364 (Biotin-requiring enzyme); contains similarity to Interpro domains IPR000089 (Biotin/lipoyl attachment), IPR006255 (Dihydrolipoamide succinyltransferase), IPR011053 (Single hybrid motif), IPR001078 (2-oxoacid dehydrogenase acyltransferase, catalytic domain), IPR023213 (Chloramphenicol acetyltransferase-like domain superfamily) | |||||
| Origin | From_laboratory | RS | ||||
| Species | Pristionchus pacificus | |||||
| Properties | Coding | CDS | ||||
| CDS_predicted_by | pristionchus.org | |||||
| Prediction_status | Confirmed | |||||
| Visible | Gene | WBGene00272236 | ||||
| Corresponding_transcript | PPA33867.1 | |||||
| Corresponding_protein | PP65717 | |||||
| Corresponding_oligo_set | GPL14372_Probes_52514 | |||||
| GPL14372_Probes_52517 | ||||||
| GPL14372_Probes_52518 | ||||||
| Matching_cDNA | AW097762 | Inferred_automatically | transcript_builder.pl | |||
| BQ088270 | Inferred_automatically | transcript_builder.pl | ||||
| BI703684 | Inferred_automatically | transcript_builder.pl | ||||
| Microarray_results | GPL14372_Probes_52514 | |||||
| GPL14372_Probes_52517 | ||||||
| GPL14372_Probes_52518 | ||||||
| RNASeq_FPKM | WBls:0000032 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
| WBls:0000101 | 3.10269 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
| Method | curated |
