WormBase Tree Display for CDS: PPA33966
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PPA33966 | SMap | S_parent | Sequence | PPA_ChrII | ||
---|---|---|---|---|---|---|
Structure | Source_exons | 1 | 46 | |||
104 | 159 | |||||
206 | 266 | |||||
311 | 390 | |||||
441 | 531 | |||||
606 | 643 | |||||
DB_info | Database | pristionchus.org | cds | gene-UMA-S245-10.12 | ||
DB_remark | contains similarity to Pfam domain PF00635 (MSP (Major sperm protein) domain); contains similarity to Interpro domains IPR000535 (Major sperm protein (MSP) domain), IPR008962 (PapD-like superfamily), IPR013783 (Immunoglobulin-like fold) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Predicted | |||||
Visible | Gene | WBGene00272335 | ||||
Corresponding_transcript | PPA33966.1 | |||||
Corresponding_protein | PP27616 | |||||
Corresponding_oligo_set | GPL14372_Probes_67689 | |||||
Microarray_results | GPL14372_Probes_67689 | |||||
RNASeq_FPKM | WBls:0000032 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Method | curated |