WormBase Tree Display for CDS: PPA34001
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PPA34001 | SMap | S_parent | Sequence | PPA_ChrI | ||
---|---|---|---|---|---|---|
Structure | Source_exons | 1 | 66 | |||
114 | 195 | |||||
356 | 420 | |||||
468 | 713 | |||||
DB_info | Database | pristionchus.org | cds | gene-UMA-S278-3.75 | ||
DB_remark | PPA-TTR-51.2 protein; contains similarity to Pfam domain PF01060 (Transthyretin-like family); contains similarity to Interpro domains IPR038479 (Transthyretin-like superfamily), IPR001534 (Transthyretin-like) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Partially_confirmed | |||||
Visible | Gene | WBGene00272370 | ||||
Corresponding_transcript | PPA34001.1 | |||||
Corresponding_protein | PP61896 | |||||
Corresponding_oligo_set | GPL14372_Probes_73675 | |||||
Microarray_results | GPL14372_Probes_73675 | |||||
RNASeq_FPKM | WBls:0000032 | 440.843 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 14.8858 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Method | curated |