WormBase Tree Display for CDS: PPA34006
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PPA34006 | Evidence | Curator_confirmed | WBPerson4055 | |||
---|---|---|---|---|---|---|
SMap | S_parent | Sequence | PPA_ChrI | |||
Structure | Source_exons (11) | |||||
DB_info | Database | pristionchus.org | cds | gene-UMA-S278-11.34 | ||
DB_remark | contains similarity to Pfam domain PF14938 (Soluble NSF attachment protein, SNAP); contains similarity to Interpro domains IPR000744 (NSF attachment protein), IPR011990 (Tetratricopeptide-like helical domain superfamily) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Predicted | |||||
Visible | Gene | WBGene00272375 | ||||
Corresponding_transcript | PPA34006.1 | |||||
Corresponding_protein | PP75336 | |||||
Corresponding_oligo_set | GPL14372_Probes_43038 | |||||
Microarray_results | GPL14372_Probes_43038 | |||||
RNASeq_FPKM | WBls:0000032 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Last_reviewed | 25 Sep 2019 14:13:48 | WBPerson4055 | ||||
Remark | [190221 mh6] updated to the latest set provided my MPG | Curator_confirmed | WBPerson18244 | |||
[190925 mh6] This CDS has been updated based on the RNAseq data. | Curator_confirmed | WBPerson4055 | ||||
From_analysis | RNASeq | |||||
Method | curated |