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WormBase Tree Display for CDS: PPA34006

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Name Class

PPA34006EvidenceCurator_confirmedWBPerson4055
SMapS_parentSequencePPA_ChrI
StructureSource_exons (11)
DB_infoDatabasepristionchus.orgcdsgene-UMA-S278-11.34
DB_remarkcontains similarity to Pfam domain PF14938 (Soluble NSF attachment protein, SNAP); contains similarity to Interpro domains IPR000744 (NSF attachment protein), IPR011990 (Tetratricopeptide-like helical domain superfamily)
OriginFrom_laboratoryRS
SpeciesPristionchus pacificus
PropertiesCodingCDS
CDS_predicted_bypristionchus.org
Prediction_statusPredicted
VisibleGeneWBGene00272375
Corresponding_transcriptPPA34006.1
Corresponding_proteinPP75336
Corresponding_oligo_setGPL14372_Probes_43038
Microarray_resultsGPL14372_Probes_43038
RNASeq_FPKMWBls:00000320From_analysisRNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659
WBls:00001010From_analysisRNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656
Last_reviewed25 Sep 2019 14:13:48WBPerson4055
Remark[190221 mh6] updated to the latest set provided my MPGCurator_confirmedWBPerson18244
[190925 mh6] This CDS has been updated based on the RNAseq data.Curator_confirmedWBPerson4055
From_analysisRNASeq
Methodcurated