WormBase Tree Display for CDS: PPA34314
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PPA34314 | SMap | S_parent | Sequence | PPA_ChrIV | ||
---|---|---|---|---|---|---|
Structure | Source_exons | 1 | 100 | |||
811 | 901 | |||||
987 | 1161 | |||||
1233 | 1444 | |||||
1527 | 1795 | |||||
1938 | 2026 | |||||
2120 | 2317 | |||||
2389 | 2457 | |||||
2738 | 2917 | |||||
2973 | 2984 | |||||
DB_info | Database | pristionchus.org | cds | gene-UMA-S2840-103.104 | ||
DB_remark | contains similarity to Pfam domain PF00012 (Hsp70 protein); contains similarity to Interpro domains IPR029048 (Heat shock protein 70kD, C-terminal domain superfamily), IPR029047 (Heat shock protein 70kD, peptide-binding domain superfamily), IPR013126 (Heat shock protein 70 family), IPR043129 (ATPase, nucleotide binding domain) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Partially_confirmed | |||||
Visible | Gene | WBGene00272683 | ||||
Corresponding_transcript | PPA34314.1 | |||||
Corresponding_protein | PP51966 | |||||
Corresponding_oligo_set | GPL14372_Probes_30134 | |||||
Matching_cDNA | BI773608 | Inferred_automatically | transcript_builder.pl | |||
FE941597 | Inferred_automatically | transcript_builder.pl | ||||
Microarray_results | GPL14372_Probes_30134 | |||||
RNASeq_FPKM | WBls:0000032 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Method | curated |