WormBase Tree Display for CDS: PPA34521
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PPA34521 | SMap | S_parent | Sequence | PPA_ChrI | ||
---|---|---|---|---|---|---|
Structure | Source_exons (23) | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S7-3.12 | ||
DB_remark | contains similarity to Pfam domain PF00057 (Low-density lipoprotein receptor domain class A); contains similarity to Interpro domains IPR036055 (LDL receptor-like superfamily), IPR002172 (Low-density lipoprotein (LDL) receptor class A repeat), IPR002557 (Chitin binding domain) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Predicted | |||||
Visible | Gene | WBGene00272890 | ||||
Corresponding_transcript | PPA34521.1 | |||||
Corresponding_protein | PP65443 | |||||
Corresponding_oligo_set | GPL14372_Probes_35482 | |||||
GPL14372_Probes_35483 | ||||||
GPL14372_Probes_35484 | ||||||
Microarray_results | GPL14372_Probes_35482 | |||||
GPL14372_Probes_35483 | ||||||
GPL14372_Probes_35484 | ||||||
RNASeq_FPKM | WBls:0000032 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 1.74531 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Method | curated |