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WormBase Tree Display for CDS: PPA34522

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Name Class

PPA34522SMapS_parentSequencePPA_ChrI
StructureSource_exons (12)
DB_infoDatabasepristionchus.orgcdsgene-UMM-S7-3.13
DB_remarkcontains similarity to Pfam domains PF00270 (DEAD/DEAH box helicase), PF00271 (Helicase conserved C-terminal domain); contains similarity to Interpro domains IPR011545 (DEAD/DEAH box helicase domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR001650 (Helicase, C-terminal domain-like), IPR014001 (Helicase superfamily 1/2, ATP-binding domain)
OriginFrom_laboratoryRS
SpeciesPristionchus pacificus
PropertiesCodingCDS
CDS_predicted_bypristionchus.org
Prediction_statusPartially_confirmed
End_not_found
VisibleGeneWBGene00272891
Corresponding_transcriptPPA34522.1
Corresponding_proteinPP58820
Corresponding_oligo_setGPL14372_Probes_35261
GPL14372_Probes_35262
Matching_cDNAAW097146Inferred_automaticallytranscript_builder.pl
AI987124Inferred_automaticallytranscript_builder.pl
AI986492Inferred_automaticallytranscript_builder.pl
AW114261Inferred_automaticallytranscript_builder.pl
Microarray_resultsGPL14372_Probes_35261
GPL14372_Probes_35262
RNASeq_FPKMWBls:000003249.027From_analysisRNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659
WBls:00001015.9897From_analysisRNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656
Methodcurated