WormBase Tree Display for CDS: PPA34522
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PPA34522 | SMap | S_parent | Sequence | PPA_ChrI | ||
---|---|---|---|---|---|---|
Structure | Source_exons (12) | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S7-3.13 | ||
DB_remark | contains similarity to Pfam domains PF00270 (DEAD/DEAH box helicase), PF00271 (Helicase conserved C-terminal domain); contains similarity to Interpro domains IPR011545 (DEAD/DEAH box helicase domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR001650 (Helicase, C-terminal domain-like), IPR014001 (Helicase superfamily 1/2, ATP-binding domain) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Partially_confirmed | |||||
End_not_found | ||||||
Visible | Gene | WBGene00272891 | ||||
Corresponding_transcript | PPA34522.1 | |||||
Corresponding_protein | PP58820 | |||||
Corresponding_oligo_set | GPL14372_Probes_35261 | |||||
GPL14372_Probes_35262 | ||||||
Matching_cDNA | AW097146 | Inferred_automatically | transcript_builder.pl | |||
AI987124 | Inferred_automatically | transcript_builder.pl | ||||
AI986492 | Inferred_automatically | transcript_builder.pl | ||||
AW114261 | Inferred_automatically | transcript_builder.pl | ||||
Microarray_results | GPL14372_Probes_35261 | |||||
GPL14372_Probes_35262 | ||||||
RNASeq_FPKM | WBls:0000032 | 49.027 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 5.9897 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Method | curated |