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WormBase Tree Display for CDS: PPA34586

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Name Class

PPA34586SMapS_parentSequencePPA_ChrI
StructureSource_exons (52)
DB_infoDatabasepristionchus.orgcdsgene-UMM-S7-15.24
DB_remarkPPA-CGP-1 protein; contains similarity to Pfam domains PF00009 (Elongation factor Tu GTP binding domain), PF03328 (HpcH/HpaI aldolase/citrate lyase family); contains similarity to Interpro domains IPR040442 (Pyruvate kinase-like domain superfamily), IPR000795 (Translational (tr)-type GTP-binding domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR009001 (Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal), IPR005000 (HpcH/HpaI aldolase/citrate lyase domain), IPR009000 (Translation protein, beta-barrel domain superfamily), IPR039263 (), IPR015813 (Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily), IPR036570 (HORMA domain superfamily)
OriginFrom_laboratoryRS
SpeciesPristionchus pacificus
PropertiesCodingCDS
CDS_predicted_bypristionchus.org
Prediction_statusPartially_confirmed
VisibleGeneWBGene00272955
Corresponding_transcriptPPA34586.1
Corresponding_proteinPP52089
Corresponding_oligo_setGPL14372_Probes_35671
GPL14372_Probes_35675
GPL14372_Probes_35676
Microarray_resultsGPL14372_Probes_35671
GPL14372_Probes_35675
GPL14372_Probes_35676
RNASeq_FPKMWBls:00000323.61152From_analysisRNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659
WBls:00001011.70596From_analysisRNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656
Methodcurated