WormBase Tree Display for CDS: PPA34586
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PPA34586 | SMap | S_parent | Sequence | PPA_ChrI | ||
---|---|---|---|---|---|---|
Structure | Source_exons (52) | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S7-15.24 | ||
DB_remark | PPA-CGP-1 protein; contains similarity to Pfam domains PF00009 (Elongation factor Tu GTP binding domain), PF03328 (HpcH/HpaI aldolase/citrate lyase family); contains similarity to Interpro domains IPR040442 (Pyruvate kinase-like domain superfamily), IPR000795 (Translational (tr)-type GTP-binding domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR009001 (Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal), IPR005000 (HpcH/HpaI aldolase/citrate lyase domain), IPR009000 (Translation protein, beta-barrel domain superfamily), IPR039263 (), IPR015813 (Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily), IPR036570 (HORMA domain superfamily) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Partially_confirmed | |||||
Visible | Gene | WBGene00272955 | ||||
Corresponding_transcript | PPA34586.1 | |||||
Corresponding_protein | PP52089 | |||||
Corresponding_oligo_set | GPL14372_Probes_35671 | |||||
GPL14372_Probes_35675 | ||||||
GPL14372_Probes_35676 | ||||||
Microarray_results | GPL14372_Probes_35671 | |||||
GPL14372_Probes_35675 | ||||||
GPL14372_Probes_35676 | ||||||
RNASeq_FPKM | WBls:0000032 | 3.61152 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 1.70596 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Method | curated |