WormBase Tree Display for CDS: PPA34598
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PPA34598 | SMap | S_parent | Sequence | PPA_ChrI | ||
---|---|---|---|---|---|---|
Structure | Source_exons | 1 | 81 | |||
395 | 523 | |||||
678 | 761 | |||||
907 | 967 | |||||
1032 | 1172 | |||||
1235 | 1653 | |||||
1817 | 2056 | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S7-18.9 | ||
DB_remark | contains similarity to Pfam domain PF01484 (Nematode cuticle collagen N-terminal domain); contains similarity to Interpro domain IPR002486 (Nematode cuticle collagen, N-terminal) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Partially_confirmed | |||||
Visible | Gene | WBGene00272967 | ||||
Corresponding_transcript | PPA34598.1 | |||||
Corresponding_protein | PP66252 | |||||
Corresponding_oligo_set | GPL14372_Probes_35743 | |||||
Matching_cDNA | BI500368 | Inferred_automatically | transcript_builder.pl | |||
Microarray_results | GPL14372_Probes_35743 | |||||
RNASeq_FPKM | WBls:0000032 | 3.39108 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 8.01055 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Method | curated |