WormBase Tree Display for CDS: PPA34601
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PPA34601 | SMap | S_parent | Sequence | PPA_ChrI | ||
---|---|---|---|---|---|---|
Structure | Source_exons (32) | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S7-18.48 | ||
DB_remark | contains similarity to Pfam domains PF04685 (Glycosyl-hydrolase family 116, catalytic region), PF12215 (beta-glucosidase 2, glycosyl-hydrolase family 116 N-term); contains similarity to Interpro domains IPR006775 (Glycosyl-hydrolase family 116, catalytic region), IPR014551 (Beta-glucosidase GBA2-type), IPR024462 (Glycosyl-hydrolase family 116, N-terminal), IPR008928 (Six-hairpin glycosidase superfamily), IPR012341 (Six-hairpin glycosidase-like superfamily) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Partially_confirmed | |||||
Visible | Gene | WBGene00272970 | ||||
Corresponding_transcript | PPA34601.1 | |||||
Corresponding_protein | PP06526 | |||||
RNASeq_FPKM | WBls:0000032 | 18.1178 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 4.93765 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Method | curated |