WormBase Tree Display for CDS: PPA34642
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PPA34642 | SMap | S_parent | Sequence | PPA_ChrI | ||
---|---|---|---|---|---|---|
Structure | Source_exons | 1 | 81 | |||
246 | 375 | |||||
758 | 847 | |||||
939 | 1036 | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S7-26.19 | ||
DB_remark | PPA-RPS-30 protein; contains similarity to Pfam domain PF04758 (Ribosomal protein S30); contains similarity to Interpro domains IPR029071 (Ubiquitin-like domain superfamily), IPR006846 (Small ribosomal subunit protein eS30) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Confirmed | |||||
Visible | Gene | WBGene00273011 | ||||
Corresponding_transcript | PPA34642.1 | |||||
Corresponding_protein | PP09147 | |||||
Corresponding_oligo_set | GPL14372_Probes_35907 | |||||
GPL14372_Probes_35909 | ||||||
GPL14372_Probes_35910 | ||||||
Matching_cDNA (43) | ||||||
Microarray_results | GPL14372_Probes_35907 | |||||
GPL14372_Probes_35909 | ||||||
GPL14372_Probes_35910 | ||||||
RNASeq_FPKM | WBls:0000032 | 187.626 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 27.7162 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Method | curated |