WormBase Tree Display for CDS: PPA34684
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PPA34684 | SMap | S_parent | Sequence | PPA_ChrI | ||
---|---|---|---|---|---|---|
Structure | Source_exons (16) | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S7-32.46 | ||
DB_remark | contains similarity to Pfam domains PF00725 (3-hydroxyacyl-CoA dehydrogenase, C-terminal domain), PF02737 (3-hydroxyacyl-CoA dehydrogenase, NAD binding domain); contains similarity to Interpro domains IPR036291 (NAD(P)-binding domain superfamily), IPR008927 (6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily), IPR006108 (3-hydroxyacyl-CoA dehydrogenase, C-terminal), IPR006176 (3-hydroxyacyl-CoA dehydrogenase, NAD binding) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Predicted | |||||
Start_not_found | 1 | |||||
Visible | Gene | WBGene00273053 | ||||
Corresponding_transcript | PPA34684.1 | |||||
Corresponding_protein | PP62414 | |||||
Corresponding_oligo_set | GPL14372_Probes_35349 | |||||
GPL14372_Probes_35350 | ||||||
GPL14372_Probes_35351 | ||||||
GPL14372_Probes_35353 | ||||||
Microarray_results | GPL14372_Probes_35349 | |||||
GPL14372_Probes_35350 | ||||||
GPL14372_Probes_35351 | ||||||
GPL14372_Probes_35353 | ||||||
RNASeq_FPKM | WBls:0000032 | 38.0857 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 34.602 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Method | curated |